STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFX04408.1tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
OFX04378.1
Nucleoside:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OFX03944.1
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.736
OFX05857.1
phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.704
OFX04549.1
GTPase HflX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.652
OFX04519.1
RNA chaperone Hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.639
OFX07209.1
DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.626
OFX05397.1
NAD(P)H-hydrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.626
OFX05840.1
Isopentenyl-diphosphate delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.601
gatA
aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.591
OFX04376.1
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
Your Current Organism:
Alphaproteobacteria bacterium RIFCSPLOWO202FULL4354
NCBI taxonomy Id: 1797230
Other names: A. bacterium RIFCSPLOWO2_02_FULL_43_54, Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_43_54
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.