STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGY30661.1Transcription antitermination factor NusB; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
tuf
Elongation factor Tu; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
OGY30660.1
Ribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
OGY30686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.959
OGY31370.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.950
OGY31371.1
DNA-directed RNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.948
OGY30806.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.946
OGY30770.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.903
OGY31735.1
Ribonucleoside-diphosphate reductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.886
OGY31484.1
Transcription termination/antitermination protein NusG; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.876
OGY31405.1
Triose-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.838
Your Current Organism:
Andersenbacteria bacterium RIFCSPHIGHO201FULL4636
NCBI taxonomy Id: 1797278
Other names: C. Andersenbacteria bacterium RIFCSPHIGHO2_01_FULL_46_36, Candidatus Andersenbacteria bacterium RIFCSPHIGHO2_01_FULL_46_36
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