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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFZ77770.1Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (941 aa)    
Predicted Functional Partners:
OFZ75439.1
Excinuclease ABC subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OFZ77774.1
Transcription-repair coupling factor; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.997
OFZ74205.1
Excinuclease ABC subunit C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.990
OFZ77787.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.945
OFZ77879.1
Holliday junction DNA helicase RuvB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.937
OFZ77878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.917
OFZ77877.1
Crossover junction endodeoxyribonuclease RuvC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.908
OFZ74586.1
Arsenate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.889
OFZ75097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.879
OFZ77654.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.879
Your Current Organism:
Bdellovibrionales bacterium RIFOXYD1FULL3984
NCBI taxonomy Id: 1797401
Other names: B. bacterium RIFOXYD1_FULL_39_84, Bdellovibrionales bacterium RIFOXYD1_FULL_39_84
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