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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFZ77557.1DNA gyrase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (818 aa)    
Predicted Functional Partners:
OFZ77464.1
DNA gyrase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
OFZ75853.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.999
OFZ76276.1
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.812
OFZ77463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.801
OFZ77461.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.794
OFZ74162.1
phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.793
OFZ78173.1
Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.792
OFZ77556.1
ATP synthase F0 subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.784
OFZ74143.1
Transcription termination factor NusA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.779
OFZ77913.1
Cell division protein FtsZ; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 
 0.775
Your Current Organism:
Bdellovibrionales bacterium RIFOXYD1FULL3984
NCBI taxonomy Id: 1797401
Other names: B. bacterium RIFOXYD1_FULL_39_84, Bdellovibrionales bacterium RIFOXYD1_FULL_39_84
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