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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFZ74820.1Peptidase M3; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)    
Predicted Functional Partners:
OFZ78053.1
tryptophan--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.708
OFZ74377.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.652
OFZ77810.1
Chaperonin GroL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.508
OFZ78172.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.493
OFZ74819.1
30S ribosomal protein S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
OFZ74467.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.437
OFZ76944.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.420
OFZ75618.1
LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.419
OFZ77322.1
Endopeptidase La; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.404
OFZ77524.1
Endopeptidase La; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.404
Your Current Organism:
Bdellovibrionales bacterium RIFOXYD1FULL3984
NCBI taxonomy Id: 1797401
Other names: B. bacterium RIFOXYD1_FULL_39_84, Bdellovibrionales bacterium RIFOXYD1_FULL_39_84
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