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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFZ74449.1Type II secretion system protein GspN; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (309 aa)    
Predicted Functional Partners:
OFZ74451.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.778
OFZ74450.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OFZ74452.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.738
OFZ74453.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.607
OFZ74454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.607
OFZ74455.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.607
OFZ74456.1
Type II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
OFZ74457.1
Type II secretion system protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.477
OFZ74458.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
OFZ74459.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.441
Your Current Organism:
Bdellovibrionales bacterium RIFOXYD1FULL3984
NCBI taxonomy Id: 1797401
Other names: B. bacterium RIFOXYD1_FULL_39_84, Bdellovibrionales bacterium RIFOXYD1_FULL_39_84
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