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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OFZ75127.1Peptide chain release factor 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)    
Predicted Functional Partners:
OFZ78032.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.983
OFZ76272.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.982
OFZ74966.1
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.972
OFZ77179.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.950
OFZ78035.1
50S ribosomal protein L7/L12; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.932
OFZ75535.1
50S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.931
OFZ77518.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.917
OFZ76262.1
50S ribosomal protein L9; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.915
OFZ76277.1
50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.915
OFZ76296.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.909
Your Current Organism:
Bdellovibrionales bacterium RIFOXYD1FULL3984
NCBI taxonomy Id: 1797401
Other names: B. bacterium RIFOXYD1_FULL_39_84, Bdellovibrionales bacterium RIFOXYD1_FULL_39_84
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