STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGD62120.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)    
Predicted Functional Partners:
OGD62367.1
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.743
OGD61931.1
Nucleoside-diphosphate kinase; Catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.626
OGD63063.1
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
    
  0.620
A2215_00345
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.583
OGD62118.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.463
OGD62119.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.463
OGD62117.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.434
Your Current Organism:
Berkelbacteria bacterium RIFOXYA2FULL4310
NCBI taxonomy Id: 1797472
Other names: C. Berkelbacteria bacterium RIFOXYA2_FULL_43_10, Candidatus Berkelbacteria bacterium RIFOXYA2_FULL_43_10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.