STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGA54894.1Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
OGA54893.1
Nodulation factor ABC transporter ATP-binding protein NodI; Involved in the export of lipooligosaccharides during nodulation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.967
OGA52171.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.814
OGA48058.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.795
OGA55030.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.793
OGA52122.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.762
OGA44875.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.762
OGA47722.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.762
OGA54061.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.762
OGA48059.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.761
OGA48409.1
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.703
Your Current Organism:
Betaproteobacteria bacterium RIFCSPLOWO212FULL6258
NCBI taxonomy Id: 1797497
Other names: B. bacterium RIFCSPLOWO2_12_FULL_62_58, Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.