STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptEHypothetical protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. (170 aa)    
Predicted Functional Partners:
lptD
Hypothetical protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.999
leuS
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.894
OGA52140.1
LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.870
OGA53101.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.853
OGA44630.1
LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.849
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
 
 0.845
OGA44629.1
LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.820
OGA52175.1
LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.776
OGA46039.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.763
OGA55258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
Your Current Organism:
Betaproteobacteria bacterium RIFCSPLOWO212FULL6258
NCBI taxonomy Id: 1797497
Other names: B. bacterium RIFCSPLOWO2_12_FULL_62_58, Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.