STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGB25691.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
OGB25690.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.634
OGB26909.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.631
OGB25813.1
Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.548
OGB25129.1
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.505
OGB25689.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.487
cca
2',3'-cyclic phosphodiesterase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
   
    0.461
OGB22305.1
Phosphoribosyl transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.457
OGB22306.1
Phosphoribosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.426
OGB22412.1
30S ribosomal protein S30; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.404
Your Current Organism:
Burkholderiales bacterium RIFCSPLOWO202FULL5736
NCBI taxonomy Id: 1797562
Other names: B. bacterium RIFCSPLOWO2_02_FULL_57_36, Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.