STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGY17539.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (585 aa)    
Predicted Functional Partners:
OGY17471.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.968
A2784_01360
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
 
 
 
0.865
A2784_00225
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 
0.854
OGY16742.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.809
OGY15521.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.804
OGY17537.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.795
OGY17538.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
OGY15591.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.768
A2784_00405
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.728
recA
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.728
Your Current Organism:
Chisholmbacteria bacterium RIFCSPHIGHO201FULL4812
NCBI taxonomy Id: 1797589
Other names: C. Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_48_12, Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_48_12
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