STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpmIPhosphoglycerate mutase (2,3-diphosphoglycerate-independent); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (510 aa)    
Predicted Functional Partners:
OGY58547.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
A3F24_01150
ATP-dependent DNA helicase RecG; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.996
eno
Hypothetical protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
 0.941
A3F24_01070
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
  
 
 0.931
OGY58520.1
Triose-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.931
OGY59045.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.848
ileS
Hypothetical protein; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
  
 
 0.841
OGY59002.1
Pyruvate, water dikinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.820
OGY58791.1
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.791
OGY58790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
Your Current Organism:
Colwellbacteria bacterium RIFCSPHIGHO212FULL4417
NCBI taxonomy Id: 1797689
Other names: C. Colwellbacteria bacterium RIFCSPHIGHO2_12_FULL_44_17, Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_12_FULL_44_17
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