STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
furHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (132 aa)    
Predicted Functional Partners:
OGP32815.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.785
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.758
A2X88_07615
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.660
OGP35629.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.636
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.600
OGP34221.1
Protein TolQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.555
OGP35132.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.
   
 
 0.545
OGP35131.1
CoA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.544
OGP34043.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.543
OGP34212.1
Protein TolR; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.540
Your Current Organism:
Deltaproteobacteria bacterium GWC26514
NCBI taxonomy Id: 1797820
Other names: D. bacterium GWC2_65_14, Deltaproteobacteria bacterium GWC2_65_14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.