STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)    
Predicted Functional Partners:
OGP60676.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.797
OGP61215.1
Hypothetical protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.783
OGP56152.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.778
OGP61364.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.775
OGP56238.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.770
A2V67_07850
Hypothetical protein; Metagenomic; derived from metagenome: sediment metagenome.
  
 
 0.745
OGP58333.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.728
OGP60755.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.723
OGP61135.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.706
OGP61209.1
Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.701
Your Current Organism:
Deltaproteobacteria bacterium RBG136114
NCBI taxonomy Id: 1797834
Other names: D. bacterium RBG_13_61_14, Deltaproteobacteria bacterium RBG_13_61_14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.