STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGP76524.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (285 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.992
OGP77237.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
OGP73458.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
OGP78126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.957
OGP72564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
OGP72565.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
OGP73944.1
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
OGP75002.1
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
OGP73368.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.957
OGP74035.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.957
Your Current Organism:
Deltaproteobacteria bacterium RBG164923
NCBI taxonomy Id: 1797840
Other names: D. bacterium RBG_16_49_23, Deltaproteobacteria bacterium RBG_16_49_23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.