STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGQ52897.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)    
Predicted Functional Partners:
OGQ53554.1
Primosomal protein N; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
      0.695
OGQ55271.1
methionine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.678
OGQ55273.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.677
OGQ54606.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.636
OGQ53744.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.589
OGQ55250.1
Methylenetetrahydrofolate reductase [NAD(P)H]; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.515
OGQ52898.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.445
OGQ54682.1
phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.434
OGQ54283.1
Methionine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.426
Your Current Organism:
Deltaproteobacteria bacterium RIFCSPLOWO212FULL4028
NCBI taxonomy Id: 1797887
Other names: D. bacterium RIFCSPLOWO2_12_FULL_40_28, Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_28
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.