STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGQ53980.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (291 aa)    
Predicted Functional Partners:
OGQ53966.1
Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.934
OGQ53969.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.929
OGQ53971.1
UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.890
OGQ53988.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.885
OGQ53991.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.872
OGQ53979.1
N-acetylneuraminate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
OGQ53981.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.854
OGQ54193.1
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.853
OGQ53977.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.847
OGQ54018.1
Cell wall biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.827
Your Current Organism:
Deltaproteobacteria bacterium RIFCSPLOWO212FULL4028
NCBI taxonomy Id: 1797887
Other names: D. bacterium RIFCSPLOWO2_12_FULL_40_28, Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_28
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.