STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGR03434.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)    
Predicted Functional Partners:
OGR03470.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.989
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 0.938
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
 
 0.897
mraY
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
 
 0.867
A2511_12855
Hypothetical protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.866
OGR06135.1
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.861
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
 
 0.860
OGR03435.1
D-alanine--D-alanine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-alanine--D-alanine ligase family.
 
    
0.838
OGR08308.1
Hypothetical protein; Essential cell division protein.
  
  
 0.815
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
  
  
 0.815
Your Current Organism:
Deltaproteobacteria bacterium RIFOXYD12FULL509
NCBI taxonomy Id: 1797902
Other names: D. bacterium RIFOXYD12_FULL_50_9, Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.