STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A2511_16390Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. (697 aa)    
Predicted Functional Partners:
ispDF
Hypothetical protein; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
    
   0.617
A2511_04470
ATP-dependent DNA helicase PcrA; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.515
OGR01126.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.505
OGR08134.1
Restriction endonuclease subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
   0.491
OGR02888.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.468
atpB
ATP synthase F0 subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
   
    0.429
OGR03303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.412
Your Current Organism:
Deltaproteobacteria bacterium RIFOXYD12FULL509
NCBI taxonomy Id: 1797902
Other names: D. bacterium RIFOXYD12_FULL_50_9, Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.