OGR19853.1 protein (Desulfobacterales bacterium GWB25626)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

OGR19853.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (297 aa)

Predicted Functional Partners:

OGR19176.1

0.913

OGR17830.1

0.903

OGR16509.1

0.873

OGR16612.1

0.873

OGR15808.1

0.873

OGR16935.1

0.864

OGR16853.1

0.845

OGR16340.1

0.824

OGR16384.1

0.818

OGR15717.1

0.818

Your Current Organism:

Desulfobacterales bacterium GWB25626

NCBI taxonomy Id: 1797913
Other names: D. bacterium GWB2_56_26, Desulfobacterales bacterium GWB2_56_26

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OGR15717.1	OGR19853.1	A2X81_06710	A2X81_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.818
OGR15808.1	OGR16853.1	A2X81_08195	A2X81_15820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OGR15808.1	OGR19853.1	A2X81_08195	A2X81_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.873
OGR16340.1	OGR17830.1	A2X81_08965	A2X81_04430	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
OGR16340.1	OGR19176.1	A2X81_08965	A2X81_11915	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OGR16340.1	OGR19853.1	A2X81_08965	A2X81_14690	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.824
OGR16384.1	OGR19853.1	A2X81_00435	A2X81_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.818
OGR16509.1	OGR16853.1	A2X81_04375	A2X81_15820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OGR16509.1	OGR19853.1	A2X81_04375	A2X81_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.873
OGR16612.1	OGR16853.1	A2X81_06200	A2X81_15820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OGR16612.1	OGR19853.1	A2X81_06200	A2X81_14690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.873
OGR16853.1	OGR15808.1	A2X81_15820	A2X81_08195	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.661
OGR16853.1	OGR16509.1	A2X81_15820	A2X81_04375	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
OGR16853.1	OGR16612.1	A2X81_15820	A2X81_06200	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.661
OGR16853.1	OGR16935.1	A2X81_15820	A2X81_11405	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Maltose alpha-D-glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
OGR16853.1	OGR19853.1	A2X81_15820	A2X81_14690	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.845
OGR16935.1	OGR16853.1	A2X81_11405	A2X81_15820	Maltose alpha-D-glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclic beta 1-2 glucan synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
OGR16935.1	OGR19853.1	A2X81_11405	A2X81_14690	Maltose alpha-D-glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.864
OGR17830.1	OGR16340.1	A2X81_04430	A2X81_08965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
OGR17830.1	OGR19176.1	A2X81_04430	A2X81_11915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

26

PPI enrichment p-value:

3e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 114

1.44

2.59

3.56e-11

GO:0044260

Cellular macromolecule metabolic process

11 of 422

0.91

1.05

1.60e-08

GO:0034641

Cellular nitrogen compound metabolic process

11 of 695

0.7

0.66

2.53e-06

GO:0044238

Primary metabolic process

11 of 1169

0.47

0.39

0.00048

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 55

1.76

4.27

2.23e-14

GO:0019843

rRNA binding

8 of 43

1.77

3.64

5.13e-11

GO:1901363

Heterocyclic compound binding

9 of 878

0.51

0.35

0.0194

GO:0097159

Organic cyclic compound binding

9 of 878

0.51

0.35

0.0194

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 60

1.72

4.16

8.99e-15

GO:0044391

Ribosomal subunit

2 of 15

1.62

0.8

0.0241

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:122

Ribosome

10 of 45

1.84

4.79

3.87e-15

CL:124

Ribosome

7 of 40

1.74

3.29

8.11e-10

CL:127

Ribosome

6 of 30

1.8

3.09

1.64e-08

CL:129

rRNA-binding

3 of 17

1.74

1.4

0.0011

CL:153

Mixed, incl. KOW (Kyprides, Ouzounis, Woese) motif., and Methylation

2 of 5

2.1

1.12

0.0077

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

jeu03010

Ribosome

10 of 54

1.76

4.46

2.74e-15

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

8 of 51

1.69

3.29

1.88e-10

GOCC:0043232

Intracellular non-membrane-bounded organelle

9 of 120

1.37

2.24

7.38e-10

GOCC:0022626

Cytosolic ribosome

4 of 21

1.78

2.02

3.03e-05

GOCC:0044391

Ribosomal subunit

4 of 27

1.67

1.81

6.40e-05

GOCC:0022627

Cytosolic small ribosomal subunit

2 of 9

1.84

0.96

0.0133

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 59

1.72

4.17

1.25e-14

KW-0699

rRNA-binding

8 of 39

1.81

3.96

7.52e-12

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