Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ORX05528.1 | ORX05529.1 | AWC30_08830 | AWC30_08840 | General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
ORX05528.1 | ORX05530.1 | AWC30_08830 | AWC30_08845 | General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
ORX05528.1 | ORX05582.1 | AWC30_08830 | AWC30_08835 | General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.714 |
ORX05529.1 | ORX05528.1 | AWC30_08840 | AWC30_08830 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
ORX05529.1 | ORX05530.1 | AWC30_08840 | AWC30_08845 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.985 |
ORX05529.1 | ORX05582.1 | AWC30_08840 | AWC30_08835 | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.482 |
ORX05530.1 | ORX05528.1 | AWC30_08845 | AWC30_08830 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
ORX05530.1 | ORX05529.1 | AWC30_08845 | AWC30_08840 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.985 |
ORX05530.1 | ORX05582.1 | AWC30_08845 | AWC30_08835 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.482 |
ORX05582.1 | ORX05528.1 | AWC30_08835 | AWC30_08830 | Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.714 |
ORX05582.1 | ORX05529.1 | AWC30_08835 | AWC30_08840 | Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.482 |
ORX05582.1 | ORX05530.1 | AWC30_08835 | AWC30_08845 | Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.482 |