Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDK26269.1 | SDK27355.1 | SAMN04487833_10172 | SAMN04487833_101102 | Translation elongation factor EF-G. | 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.647 |
| SDK26269.1 | cysS | SAMN04487833_10172 | SAMN04487833_101100 | Translation elongation factor EF-G. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.843 |
| SDK26269.1 | mrnC | SAMN04487833_10172 | SAMN04487833_101101 | Translation elongation factor EF-G. | Ribonuclease III domain-containing protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.842 |
| SDK26269.1 | rplC | SAMN04487833_10172 | SAMN04487833_12144 | Translation elongation factor EF-G. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.956 |
| SDK26269.1 | rpmA | SAMN04487833_10172 | SAMN04487833_10494 | Translation elongation factor EF-G. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.943 |
| SDK26269.1 | rpmG | SAMN04487833_10172 | SAMN04487833_12125 | Translation elongation factor EF-G. | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.899 |
| SDK27355.1 | SDK26269.1 | SAMN04487833_101102 | SAMN04487833_10172 | 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Translation elongation factor EF-G. | 0.647 |
| SDK27355.1 | cysS | SAMN04487833_101102 | SAMN04487833_101100 | 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.858 |
| SDK27355.1 | mrnC | SAMN04487833_101102 | SAMN04487833_101101 | 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribonuclease III domain-containing protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.837 |
| SDK27355.1 | rplC | SAMN04487833_101102 | SAMN04487833_12144 | 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.768 |
| SDK27355.1 | rpmA | SAMN04487833_101102 | SAMN04487833_10494 | 23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.535 |
| SDK29274.1 | SDK38970.1 | SAMN04487833_101150 | SAMN04487833_102109 | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | 0.721 |
| SDK29274.1 | mrnC | SAMN04487833_101150 | SAMN04487833_101101 | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | Ribonuclease III domain-containing protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.745 |
| SDK29274.1 | polC | SAMN04487833_101150 | SAMN04487833_10464 | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | DNA polymerase-3 subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.503 |
| SDK29274.1 | rplC | SAMN04487833_101150 | SAMN04487833_12144 | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.613 |
| SDK29274.1 | rpmA | SAMN04487833_101150 | SAMN04487833_10494 | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.587 |
| SDK29274.1 | rpmG | SAMN04487833_101150 | SAMN04487833_12125 | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.587 |
| SDK38970.1 | SDK29274.1 | SAMN04487833_102109 | SAMN04487833_101150 | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains. | 0.721 |
| SDK38970.1 | SDL16546.1 | SAMN04487833_102109 | SAMN04487833_11383 | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | RNA-binding protein YlmH, contains S4-like domain. | 0.537 |
| SDK38970.1 | mrnC | SAMN04487833_102109 | SAMN04487833_101101 | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | Ribonuclease III domain-containing protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.691 |
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