SDK80018.1 protein (Sarcina sp. DSM 11001) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDK80018.1

D-alanyl-D-alanine carboxypeptidase. (423 aa)

Predicted Functional Partners:

ddl

0.749

SDK25632.1

0.662

SDK39318.1

0.572

SDL02149.1

0.509

SDL58435.1

0.494

truB

0.463

SDL39065.1

0.451

SDL42969.1

0.451

SDL38960.1

0.448

murF

0.447

Your Current Organism:

Sarcina sp. DSM 11001

NCBI taxonomy Id: 1798184
Other names: S. sp. DSM 11001

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDK25632.1	SDK39318.1	SAMN04487833_10152	SAMN04487833_102119	Penicillin-binding protein 1A.	Putative cell wall binding repeat-containing protein.	0.824
SDK25632.1	SDK80018.1	SAMN04487833_10152	SAMN04487833_107112	Penicillin-binding protein 1A.	D-alanyl-D-alanine carboxypeptidase.	0.662
SDK25632.1	SDL02149.1	SAMN04487833_10152	SAMN04487833_1117	Penicillin-binding protein 1A.	Stage V sporulation protein D (sporulation-specific penicillin-binding protein).	0.835
SDK25632.1	SDL38960.1	SAMN04487833_10152	SAMN04487833_11844	Penicillin-binding protein 1A.	Penicillin-binding protein 2.	0.971
SDK25632.1	SDL39065.1	SAMN04487833_10152	SAMN04487833_11847	Penicillin-binding protein 1A.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.769
SDK25632.1	SDL42969.1	SAMN04487833_10152	SAMN04487833_11943	Penicillin-binding protein 1A.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.769
SDK25632.1	ddl	SAMN04487833_10152	SAMN04487833_10796	Penicillin-binding protein 1A.	D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.	0.575
SDK25632.1	murF	SAMN04487833_10152	SAMN04487833_10797	Penicillin-binding protein 1A.	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.525
SDK39318.1	SDK25632.1	SAMN04487833_102119	SAMN04487833_10152	Putative cell wall binding repeat-containing protein.	Penicillin-binding protein 1A.	0.824
SDK39318.1	SDK80018.1	SAMN04487833_102119	SAMN04487833_107112	Putative cell wall binding repeat-containing protein.	D-alanyl-D-alanine carboxypeptidase.	0.572
SDK39318.1	SDL02149.1	SAMN04487833_102119	SAMN04487833_1117	Putative cell wall binding repeat-containing protein.	Stage V sporulation protein D (sporulation-specific penicillin-binding protein).	0.541
SDK39318.1	SDL38960.1	SAMN04487833_102119	SAMN04487833_11844	Putative cell wall binding repeat-containing protein.	Penicillin-binding protein 2.	0.541
SDK39318.1	SDL39065.1	SAMN04487833_102119	SAMN04487833_11847	Putative cell wall binding repeat-containing protein.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.797
SDK39318.1	SDL42969.1	SAMN04487833_102119	SAMN04487833_11943	Putative cell wall binding repeat-containing protein.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.803
SDK39318.1	SDL58435.1	SAMN04487833_102119	SAMN04487833_12336	Putative cell wall binding repeat-containing protein.	Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling).	0.778
SDK80018.1	SDK25632.1	SAMN04487833_107112	SAMN04487833_10152	D-alanyl-D-alanine carboxypeptidase.	Penicillin-binding protein 1A.	0.662
SDK80018.1	SDK39318.1	SAMN04487833_107112	SAMN04487833_102119	D-alanyl-D-alanine carboxypeptidase.	Putative cell wall binding repeat-containing protein.	0.572
SDK80018.1	SDL02149.1	SAMN04487833_107112	SAMN04487833_1117	D-alanyl-D-alanine carboxypeptidase.	Stage V sporulation protein D (sporulation-specific penicillin-binding protein).	0.509
SDK80018.1	SDL38960.1	SAMN04487833_107112	SAMN04487833_11844	D-alanyl-D-alanine carboxypeptidase.	Penicillin-binding protein 2.	0.448
SDK80018.1	SDL39065.1	SAMN04487833_107112	SAMN04487833_11847	D-alanyl-D-alanine carboxypeptidase.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.451