STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL94958.1WYL domain-containing protein. (451 aa)    
Predicted Functional Partners:
SDL94998.1
WYL domain-containing protein.
 
     0.944
SDL46547.1
Protein of unknown function.
 
     0.755
SDK62464.1
Protein of unknown function.
 
     0.690
SDL41357.1
RNA-splicing ligase RtcB, repairs tRNA damage.
 
     0.635
SDM08869.1
Hypothetical protein.
  
     0.542
SDM08999.1
Hypothetical protein.
  
     0.498
SDL95064.1
acyl-CoA thioesterase.
       0.458
SDL94916.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.449
Your Current Organism:
Sarcina sp. DSM 11001
NCBI taxonomy Id: 1798184
Other names: S. sp. DSM 11001
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