STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL97697.1CotH protein. (739 aa)    
Predicted Functional Partners:
SDL64822.1
Glycosyl hydrolase-like 10.
 
 
  0.780
SDK97663.1
CotH protein.
  
    0.757
SDK82644.1
CotH protein.
  
    0.740
SDK57032.1
Hypothetical protein.
    
  0.673
SDK25096.1
CotH protein.
 
  
 
0.667
SDL39065.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.664
SDL42969.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
   
 
 0.664
SDK25632.1
Penicillin-binding protein 1A.
    
 0.629
SDL94231.1
NlpC/P60 family protein.
  
 
 0.629
SDK29911.1
MacB-like core domain-containing protein.
  
 
  0.617
Your Current Organism:
Sarcina sp. DSM 11001
NCBI taxonomy Id: 1798184
Other names: S. sp. DSM 11001
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