STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDQ79665.1Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62. (474 aa)    
Predicted Functional Partners:
SDQ79351.1
Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62.
 
 
0.971
SDQ79689.1
LysE type translocator.
       0.508
SDR11798.1
Peptidyl-dipeptidase Dcp.
  
   
 0.454
SDR32341.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
   
 0.436
Your Current Organism:
Pseudovibrio sp. TunPSC045I4
NCBI taxonomy Id: 1798213
Other names: P. sp. Tun.PSC04-5.I4, Pseudovibrio sp. Tun.PSC04-5.I4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.