Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS12606.1 | SDS40841.1 | SAMN04515667_1468 | SAMN04515667_2109 | Por secretion system C-terminal sorting domain-containing protein. | Methyltransferase domain-containing protein. | 0.468 |
SDS12606.1 | SDS43707.1 | SAMN04515667_1468 | SAMN04515667_2176 | Por secretion system C-terminal sorting domain-containing protein. | Aspartyl protease. | 0.737 |
SDS12606.1 | SDS67306.1 | SAMN04515667_1468 | SAMN04515667_2709 | Por secretion system C-terminal sorting domain-containing protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.659 |
SDS15497.1 | SDS40841.1 | SAMN04515667_1533 | SAMN04515667_2109 | ABC1 family protein. | Methyltransferase domain-containing protein. | 0.479 |
SDS18942.1 | SDS40841.1 | SAMN04515667_1610 | SAMN04515667_2109 | 2-octaprenylphenol hydroxylase. | Methyltransferase domain-containing protein. | 0.479 |
SDS37839.1 | SDS40841.1 | SAMN04515667_2040 | SAMN04515667_2109 | UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase. | Methyltransferase domain-containing protein. | 0.572 |
SDS37839.1 | kmo | SAMN04515667_2040 | SAMN04515667_1062 | UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase. | Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily. | 0.484 |
SDS40841.1 | SDS12606.1 | SAMN04515667_2109 | SAMN04515667_1468 | Methyltransferase domain-containing protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.468 |
SDS40841.1 | SDS15497.1 | SAMN04515667_2109 | SAMN04515667_1533 | Methyltransferase domain-containing protein. | ABC1 family protein. | 0.479 |
SDS40841.1 | SDS18942.1 | SAMN04515667_2109 | SAMN04515667_1610 | Methyltransferase domain-containing protein. | 2-octaprenylphenol hydroxylase. | 0.479 |
SDS40841.1 | SDS37839.1 | SAMN04515667_2109 | SAMN04515667_2040 | Methyltransferase domain-containing protein. | UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase. | 0.572 |
SDS40841.1 | SDS40888.1 | SAMN04515667_2109 | SAMN04515667_2110 | Methyltransferase domain-containing protein. | Hypothetical protein. | 0.464 |
SDS40841.1 | SDS43707.1 | SAMN04515667_2109 | SAMN04515667_2176 | Methyltransferase domain-containing protein. | Aspartyl protease. | 0.606 |
SDS40841.1 | SDS67306.1 | SAMN04515667_2109 | SAMN04515667_2709 | Methyltransferase domain-containing protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.506 |
SDS40841.1 | gcvP | SAMN04515667_2109 | SAMN04515667_1288 | Methyltransferase domain-containing protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.475 |
SDS40841.1 | glyA | SAMN04515667_2109 | SAMN04515667_2363 | Methyltransferase domain-containing protein. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.439 |
SDS40841.1 | kmo | SAMN04515667_2109 | SAMN04515667_1062 | Methyltransferase domain-containing protein. | Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily. | 0.547 |
SDS40888.1 | SDS40841.1 | SAMN04515667_2110 | SAMN04515667_2109 | Hypothetical protein. | Methyltransferase domain-containing protein. | 0.464 |
SDS43707.1 | SDS12606.1 | SAMN04515667_2176 | SAMN04515667_1468 | Aspartyl protease. | Por secretion system C-terminal sorting domain-containing protein. | 0.737 |
SDS43707.1 | SDS40841.1 | SAMN04515667_2176 | SAMN04515667_2109 | Aspartyl protease. | Methyltransferase domain-containing protein. | 0.606 |
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