STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE08625.1DNA-binding transcriptional regulator, XRE-family HTH domain. (96 aa)    
Predicted Functional Partners:
SFF45848.1
TIGR03083 family protein.
   
 
 0.923
SFE08660.1
ABC-2 type transport system permease protein.
 
     0.889
SFE08715.1
ABC-2 type transport system ATP-binding protein.
 
     0.866
SFE08569.1
Hypothetical protein.
       0.773
SFE08767.1
uroporphyrinogen-III C-methyltransferase.
       0.612
cobT
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
       0.457
SFE08477.1
Hypothetical protein.
       0.422
SFE08526.1
Protein of unknown function.
       0.422
Your Current Organism:
Blastococcus sp. DSM 46838
NCBI taxonomy Id: 1798228
Other names: B. sp. DSM 46838
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.