OGU14007.1 protein (Geobacteraceae bacterium GWC25311)

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

OGU14007.1

Organic solvent tolerance ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)

Predicted Functional Partners:

OGU14005.1

0.994

OGU14003.1

0.951

OGU14004.1

0.937

OGU13639.1

0.880

OGU15228.1

0.866

OGU15230.1

0.863

OGU14006.1

0.848

OGU15227.1

0.811

OGU17934.1

0.486

OGU16605.1

0.457

Your Current Organism:

Geobacteraceae bacterium GWC25311

NCBI taxonomy Id: 1798316
Other names: G. bacterium GWC2_53_11, Geobacteraceae bacterium GWC2_53_11

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OGU13639.1	OGU14003.1	A2076_08750	A2076_09640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
OGU13639.1	OGU14005.1	A2076_08750	A2076_09650	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
OGU13639.1	OGU14007.1	A2076_08750	A2076_09660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
OGU14003.1	OGU13639.1	A2076_09640	A2076_08750	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
OGU14003.1	OGU14004.1	A2076_09640	A2076_09645	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OGU14003.1	OGU14005.1	A2076_09640	A2076_09650	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OGU14003.1	OGU14006.1	A2076_09640	A2076_09655	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.567
OGU14003.1	OGU14007.1	A2076_09640	A2076_09660	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
OGU14003.1	OGU15227.1	A2076_09640	A2076_16035	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
OGU14003.1	OGU15228.1	A2076_09640	A2076_16040	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OGU14003.1	OGU15230.1	A2076_09640	A2076_16050	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
OGU14003.1	OGU16605.1	A2076_09640	A2076_02720	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
OGU14004.1	OGU14003.1	A2076_09645	A2076_09640	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OGU14004.1	OGU14005.1	A2076_09645	A2076_09650	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
OGU14004.1	OGU14006.1	A2076_09645	A2076_09655	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RND transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.580
OGU14004.1	OGU14007.1	A2076_09645	A2076_09660	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
OGU14004.1	OGU15227.1	A2076_09645	A2076_16035	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
OGU14004.1	OGU15228.1	A2076_09645	A2076_16040	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
OGU14004.1	OGU15230.1	A2076_09645	A2076_16050	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OGU14004.1	OGU16605.1	A2076_09645	A2076_02720	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840

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Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

14

PPI enrichment p-value:

1.11e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006081

Cellular aldehyde metabolic process

4 of 12

1.76

1.51

0.00062

GO:0072525

Pyridine-containing compound biosynthetic process

3 of 8

1.81

1.32

0.0021

GO:1901617

Organic hydroxy compound biosynthetic process

3 of 9

1.76

1.27

0.0025

GO:0016114

Terpenoid biosynthetic process

3 of 9

1.76

1.27

0.0025

GO:0042364

Water-soluble vitamin biosynthetic process

4 of 22

1.5

1.18

0.0019

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1974

Isoprene biosynthesis, and Amine-lyase activity

6 of 14

1.87

2.98

1.06e-07

CL:1992

Amine-lyase activity, and Thiamine pyrophosphate

4 of 5

2.14

2.54

8.05e-06

CL:1976

Isopentenyl diphosphate metabolic process

2 of 5

1.84

0.75

0.0370

CL:1029

tRNA processing, and rRNA base methylation

2 of 5

1.84

0.75

0.0370

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00900

Terpenoid backbone biosynthesis

3 of 14

1.57

0.96

0.0093

map00750

Vitamin B6 metabolism

2 of 4

1.94

0.87

0.0224

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005737

Cytoplasm

9 of 441

0.55

0.38

0.0142

GOCC:0005622

Intracellular

10 of 671

0.41

0.3

0.0232

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0414

Isoprene biosynthesis

3 of 7

1.87

1.28

0.0028

KW-0004

4Fe-4S

3 of 18

1.46

0.84

0.0151

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