STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGU25960.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (364 aa)    
Predicted Functional Partners:
OGU25959.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.923
OGU25958.1
Lysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
      0.734
OGU27572.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.697
OGU25992.1
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
    
0.689
OGU25901.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.653
OGU25244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.627
OGU27600.1
Lysine biosynthesis enzyme LysX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.
    
 0.560
OGU25659.1
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.470
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.429
OGU27944.1
Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.419
Your Current Organism:
Ignavibacteria bacterium GWA25416
NCBI taxonomy Id: 1798420
Other names: I. bacterium GWA2_54_16, Ignavibacteria bacterium GWA2_54_16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.