STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGY75487.1rRNA maturation RNase YbeY; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (132 aa)    
Predicted Functional Partners:
OGY76135.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.990
OGY75238.1
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.982
OGY75160.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.977
A2240_06170
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
  
 
 0.973
OGY76128.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.926
OGY76152.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.925
OGY75237.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.923
OGY76143.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.909
OGY75488.1
Cell division protein FtsA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.806
OGY76113.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.793
Your Current Organism:
Jacksonbacteria bacterium RIFOXYA2FULL4312
NCBI taxonomy Id: 1798462
Other names: C. Jacksonbacteria bacterium RIFOXYA2_FULL_43_12, Candidatus Jacksonbacteria bacterium RIFOXYA2_FULL_43_12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.