STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGY76358.1DNA polymerase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (933 aa)    
Predicted Functional Partners:
OGY75007.1
DNA polymerase III subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.999
OGY75906.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.999
OGY75908.1
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
OGY76196.1
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OGY76431.1
glycine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.981
OGY76180.1
DNA-formamidopyrimidine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.968
OGY76931.1
DNA primase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.924
OGY75303.1
Histidinol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
A2240_02475
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.902
OGY76895.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.894
Your Current Organism:
Jacksonbacteria bacterium RIFOXYA2FULL4312
NCBI taxonomy Id: 1798462
Other names: C. Jacksonbacteria bacterium RIFOXYA2_FULL_43_12, Candidatus Jacksonbacteria bacterium RIFOXYA2_FULL_43_12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.