STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGG74587.1Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
OGG74588.1
3-dehydroquinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
OGG74572.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.969
OGG74573.1
3-deoxy-7-phosphoheptulonate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.958
OGG74501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.877
OGG74632.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.875
OGG74769.1
Carbamoyl phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.865
OGG74709.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.770
OGG74571.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.769
OGG74770.1
Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.718
OGG74574.1
Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.700
Your Current Organism:
Kaiserbacteria bacterium RIFCSPLOWO201FULL5236
NCBI taxonomy Id: 1798510
Other names: C. Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_52_36, Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_52_36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.