STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGY88741.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (76 aa)    
Predicted Functional Partners:
A2927_02165
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.961
OGY88865.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  0.875
A2927_02180
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.843
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.837
OGY89093.1
Copper-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.835
OGY88590.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.774
A2927_02830
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.767
thrS
threonine--tRNA ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 0.753
OGY89963.1
Pyruvate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the pyruvate kinase family.
   
  0.746
OGY88978.1
Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  0.745
Your Current Organism:
Komeilibacteria bacterium RIFCSPLOWO201FULL4510
NCBI taxonomy Id: 1798550
Other names: C. Komeilibacteria bacterium RIFCSPLOWO2_01_FULL_45_10, Candidatus Komeilibacteria bacterium RIFCSPLOWO2_01_FULL_45_10
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