STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspAHypothetical protein; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. (153 aa)    
Predicted Functional Partners:
OGG87397.1
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
OGG87180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.799
OGG87399.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.770
OGG86639.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.721
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
  
 0.617
OGG87396.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.581
glgA
Hypothetical protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.521
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
     
 0.445
OGG87406.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.429
OGG87402.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.424
Your Current Organism:
Kuenenbacteria bacterium RIFCSPHIGHO202FULL3913
NCBI taxonomy Id: 1798561
Other names: C. Kuenenbacteria bacterium RIFCSPHIGHO2_02_FULL_39_13, Candidatus Kuenenbacteria bacterium RIFCSPHIGHO2_02_FULL_39_13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.