STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXI28489.1Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)    
Predicted Functional Partners:
KXI28488.1
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.934
KXI28717.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.916
KXI28486.1
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.891
KXI28487.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
KXI28485.1
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.876
KXI28719.1
PEP-CTERM system-associated, FemAB-related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
KXI28492.1
Group 1 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
KXI26978.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
KXI28518.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.767
KXI28527.1
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
Your Current Organism:
Paraglaciecola hydrolytica
NCBI taxonomy Id: 1799789
Other names: DSM 102834, LMG 29457, LMG:29457, NCIMB 15060, P. hydrolytica, Paraglaciecola hydrolytica Bech et al. 2017, Paraglaciecola sp. S66, strain S66
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