STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZE42_05282Uncharacterized protein. (75 aa)    
Predicted Functional Partners:
AZE42_00738
Uncharacterized protein.
    
 0.823
AZE42_05939
Uncharacterized protein.
    
 0.707
AZE42_03446
MADS-box domain-containing protein.
    
 0.684
AZE42_04872
Uncharacterized protein.
    
 0.583
RVUP24
Uncharacterized protein.
    
 0.530
AZE42_03577
Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family.
    
   0.495
AZE42_00308
CYCLIN domain-containing protein; Belongs to the cyclin family.
     
 0.485
AZE42_05698
Uncharacterized protein.
    
   0.468
AZE42_00124
Uncharacterized protein.
    
   0.468
AZE42_00284
Nefa_Nip30_N domain-containing protein.
    
   0.468
Your Current Organism:
Rhizopogon vesiculosus
NCBI taxonomy Id: 180088
Other names: R. vesiculosus
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