AZE42_08843 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_08843

Uncharacterized protein. (103 aa)

Predicted Functional Partners:

AZE42_00918

0.657

AZE42_08844

0.630

AZE42_05181

0.620

AZE42_03245

0.605

AZE42_09702

0.564

AZE42_06356

0.527

AZE42_04747

0.513

AZE42_08899

0.511

AZE42_08900

0.511

AZE42_03771

0.436

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_00918	AZE42_08843	A0A1J8QUH4	A0A1J8PRB3	Uncharacterized protein.	Uncharacterized protein.	0.657
AZE42_00918	AZE42_08844	A0A1J8QUH4	A0A1J8QPX0	Uncharacterized protein.	Alpha-mann_mid domain-containing protein.	0.657
AZE42_03245	AZE42_05181	A0A1J8RCD2	A0A1J8PRB5	Uncharacterized protein.	Uncharacterized protein.	0.879
AZE42_03245	AZE42_08843	A0A1J8RCD2	A0A1J8PRB3	Uncharacterized protein.	Uncharacterized protein.	0.605
AZE42_03245	AZE42_08844	A0A1J8RCD2	A0A1J8QPX0	Uncharacterized protein.	Alpha-mann_mid domain-containing protein.	0.605
AZE42_03771	AZE42_04747	A0A1J8RDU5	A0A1J8PSY4	Uncharacterized protein.	Uncharacterized protein.	0.601
AZE42_03771	AZE42_06356	A0A1J8RDU5	A0A1J8Q7X9	Uncharacterized protein.	Uncharacterized protein.	0.795
AZE42_03771	AZE42_08843	A0A1J8RDU5	A0A1J8PRB3	Uncharacterized protein.	Uncharacterized protein.	0.436
AZE42_03771	AZE42_08844	A0A1J8RDU5	A0A1J8QPX0	Uncharacterized protein.	Alpha-mann_mid domain-containing protein.	0.436
AZE42_04747	AZE42_03771	A0A1J8PSY4	A0A1J8RDU5	Uncharacterized protein.	Uncharacterized protein.	0.601
AZE42_04747	AZE42_08843	A0A1J8PSY4	A0A1J8PRB3	Uncharacterized protein.	Uncharacterized protein.	0.513
AZE42_04747	AZE42_08844	A0A1J8PSY4	A0A1J8QPX0	Uncharacterized protein.	Alpha-mann_mid domain-containing protein.	0.513
AZE42_05181	AZE42_03245	A0A1J8PRB5	A0A1J8RCD2	Uncharacterized protein.	Uncharacterized protein.	0.879
AZE42_05181	AZE42_08843	A0A1J8PRB5	A0A1J8PRB3	Uncharacterized protein.	Uncharacterized protein.	0.620
AZE42_05181	AZE42_08844	A0A1J8PRB5	A0A1J8QPX0	Uncharacterized protein.	Alpha-mann_mid domain-containing protein.	0.620
AZE42_06356	AZE42_03771	A0A1J8Q7X9	A0A1J8RDU5	Uncharacterized protein.	Uncharacterized protein.	0.795
AZE42_06356	AZE42_08843	A0A1J8Q7X9	A0A1J8PRB3	Uncharacterized protein.	Uncharacterized protein.	0.527
AZE42_06356	AZE42_08844	A0A1J8Q7X9	A0A1J8QPX0	Uncharacterized protein.	Alpha-mann_mid domain-containing protein.	0.527
AZE42_08843	AZE42_00918	A0A1J8PRB3	A0A1J8QUH4	Uncharacterized protein.	Uncharacterized protein.	0.657
AZE42_08843	AZE42_03245	A0A1J8PRB3	A0A1J8RCD2	Uncharacterized protein.	Uncharacterized protein.	0.605