STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZE42_00740HMG box domain-containing protein. (291 aa)    
Predicted Functional Partners:
AZE42_08098
Histone H2A; Belongs to the histone H2A family.
   
 0.910
AZE42_01754
Uncharacterized protein.
    
 0.887
AZE42_01189
Uncharacterized protein.
    
 0.881
AZE42_00154
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.878
AZE42_07068
Uncharacterized protein.
    
 0.875
AZE42_04679
Uncharacterized protein.
   
 0.869
AZE42_06606
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.869
AZE42_06304
Helicase ATP-binding domain-containing protein.
    
 0.857
AZE42_04426
VWFA domain-containing protein.
    
 0.853
AZE42_00308
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.843
Your Current Organism:
Rhizopogon vesiculosus
NCBI taxonomy Id: 180088
Other names: R. vesiculosus
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