AZE42_00289 protein (Rhizopogon vesiculosus)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Gene Fusion

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Score

AZE42_00289

Uncharacterized protein. (305 aa)

Predicted Functional Partners:

AZE42_06662

0.955

AZE42_03991

0.890

AZE42_00458

0.881

AZE42_12797

0.870

AZE42_09094

0.870

AZE42_01248

0.832

AZE42_10382

0.817

AZE42_03771

0.814

AZE42_06857

0.788

AZE42_08438

0.781

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_00289	AZE42_00458	A0A1J8QBX5	A0A1J8R0W2	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.881
AZE42_00289	AZE42_01248	A0A1J8QBX5	A0A1J8QDI8	Uncharacterized protein.	Uncharacterized protein.	0.832
AZE42_00289	AZE42_03771	A0A1J8QBX5	A0A1J8RDU5	Uncharacterized protein.	Uncharacterized protein.	0.814
AZE42_00289	AZE42_03991	A0A1J8QBX5	A0A1J8R1T6	Uncharacterized protein.	DNA polymerase.	0.890
AZE42_00289	AZE42_06662	A0A1J8QBX5	A0A1J8QF03	Uncharacterized protein.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.955
AZE42_00289	AZE42_06857	A0A1J8QBX5	A0A1J8QD90	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.788
AZE42_00289	AZE42_08438	A0A1J8QBX5	A0A1J8PGM8	Uncharacterized protein.	Uncharacterized protein.	0.781
AZE42_00289	AZE42_09094	A0A1J8QBX5	A0A1J8R708	Uncharacterized protein.	Uncharacterized protein.	0.870
AZE42_00289	AZE42_10382	A0A1J8QBX5	A0A1J8QE54	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.817
AZE42_00289	AZE42_12797	A0A1J8QBX5	A0A1J8QBG6	Uncharacterized protein.	Uncharacterized protein.	0.870
AZE42_00458	AZE42_00289	A0A1J8R0W2	A0A1J8QBX5	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.881
AZE42_00458	AZE42_03771	A0A1J8R0W2	A0A1J8RDU5	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.957
AZE42_00458	AZE42_06662	A0A1J8R0W2	A0A1J8QF03	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.996
AZE42_00458	AZE42_08438	A0A1J8R0W2	A0A1J8PGM8	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Uncharacterized protein.	0.877
AZE42_01248	AZE42_00289	A0A1J8QDI8	A0A1J8QBX5	Uncharacterized protein.	Uncharacterized protein.	0.832
AZE42_01248	AZE42_03991	A0A1J8QDI8	A0A1J8R1T6	Uncharacterized protein.	DNA polymerase.	0.869
AZE42_01248	AZE42_06857	A0A1J8QDI8	A0A1J8QD90	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.863
AZE42_01248	AZE42_09094	A0A1J8QDI8	A0A1J8R708	Uncharacterized protein.	Uncharacterized protein.	0.984
AZE42_01248	AZE42_10382	A0A1J8QDI8	A0A1J8QE54	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.979
AZE42_01248	AZE42_12797	A0A1J8QDI8	A0A1J8QBG6	Uncharacterized protein.	Uncharacterized protein.	0.976

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

21

average node degree:

3.82

avg. local clustering coefficient:

0.931

expected number of edges:

10

PPI enrichment p-value:

0.00172

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0018871

1-aminocyclopropane-1-carboxylate metabolic process

3 of 3

3.42

3.55

3.89e-07

GO:0007231

Osmosensory signaling pathway

3 of 3

3.42

3.55

3.89e-07

GO:0009693

Ethylene biosynthetic process

4 of 18

2.77

3.48

3.39e-07

GO:0045596

Negative regulation of cell differentiation

3 of 6

3.12

3.28

1.09e-06

GO:0009652

Thigmotropism

3 of 7

3.05

3.21

1.44e-06

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019842

Vitamin binding

6 of 112

2.15

3.94

3.59e-09

GO:0030170

Pyridoxal phosphate binding

5 of 77

2.23

3.51

7.21e-08

GO:0051019

Mitogen-activated protein kinase binding

3 of 5

3.2

3.28

1.13e-06

GO:0016846

Carbon-sulfur lyase activity

3 of 17

2.67

2.56

1.83e-05

GO:0008483

Transaminase activity

3 of 56

2.15

1.74

0.00043

(more ...)

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:25366742

(2014) Isolation of 1-aminocyclopropane-1-carboxylate synthase gene from Oncidium Gower Ramsey.

5 of 5

3.42

6.68

7.21e-13

PMID:34067834

(2021) An Overview of Metabolic Activity, Beneficial and Pathogenic Aspects of Burkholderia Spp.

5 of 7

3.28

6.46

1.51e-12

PMID:33388891

(2021) Genes and genome editing tools for breeding desirable phenotypes in ornamentals.

6 of 24

2.82

6.4

7.00e-13

PMID:35548315

(2022) The Multifaceted Roles of MYC2 in Plants: Toward Transcriptional Reprogramming and Stress Tolerance by Jasmonate Signaling.

6 of 50

2.5

5.52

9.53e-12

PMID:34921643

(2021) Floral organ-specific proteome profiling of the floral ornamental orchid (Cymbidium goeringii) reveals candidate proteins related to floral organ development.

6 of 64

2.39

5.15

3.07e-11

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:25402

Mixed, incl. Osmosensory signaling pathway, and Negative regulation of protein serine/threonine phosphatase activity

6 of 12

3.12

7.22

4.38e-14

CL:8062

Polyamine biosynthesis, and Aminotransferases, class-I, pyridoxal-phosphate-binding site

5 of 17

2.89

5.42

7.51e-11

CL:25416

Osmosensory signaling pathway, and 1-aminocyclopropane-1-carboxylate oxidase activity

4 of 5

3.32

4.91

1.20e-09

CL:8086

1-aminocyclopropane-1-carboxylate oxidase activity, and Aminotransferases, class-I, pyridoxal-phosphate-binding site

3 of 5

3.2

3.26

1.20e-06

CL:8065

Polyamine biosynthesis, and 1-aminocyclopropane-1-carboxylate metabolic process

2 of 10

2.72

1.34

0.0037

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

dct00270

Cysteine and methionine metabolism

5 of 77

2.23

3.88

9.40e-09

dct04016

MAPK signaling pathway - plant

5 of 115

2.06

3.44

3.26e-08

dct01110

Biosynthesis of secondary metabolites

5 of 829

1.2

1.13

0.00033

dct01100

Metabolic pathways

5 of 1519

0.94

0.69

0.0045

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0043684

Type IV secretion system complex

3 of 3

3.42

3.32

1.00e-06

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00155

Aminotransferase class I and II

5 of 27

2.69

4.75

9.51e-10

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR004838

Aminotransferases, class-I, pyridoxal-phosphate-binding site

5 of 14

2.97

5.28

1.63e-10

IPR004839

Aminotransferase, class I/classII

5 of 27

2.69

4.66

1.40e-09

IPR015422

Pyridoxal phosphate-dependent transferase, small domain

5 of 62

2.33

3.69

4.46e-08

IPR015424

Pyridoxal phosphate-dependent transferase

5 of 74

2.25

3.51

7.79e-08

IPR015421

Pyridoxal phosphate-dependent transferase, major domain

5 of 75

2.25

3.5

7.79e-08

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00338

Basic region leucin zipper

3 of 63

2.1

1.59

0.00085

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