AZE42_08275 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_08275

Uncharacterized protein. (379 aa)

Predicted Functional Partners:

AZE42_07345

0.690

AZE42_09360

0.551

AZE42_08370

0.521

AZE42_08368

0.521

AZE42_03391

0.521

AZE42_10631

0.521

AZE42_03152

0.521

AZE42_05470

0.521

AZE42_08369

0.521

AZE42_02659

0.521

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_02659	AZE42_03391	A0A1J8QYT8	A0A1J8PVB4	Fe2OG dioxygenase domain-containing protein.	Aamy domain-containing protein.	0.686
AZE42_02659	AZE42_08275	A0A1J8QYT8	A0A1J8QFE2	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.521
AZE42_02659	AZE42_10631	A0A1J8QYT8	A0A1J8Q9F7	Fe2OG dioxygenase domain-containing protein.	Aamy domain-containing protein.	0.693
AZE42_03152	AZE42_08275	A0A1J8QAC6	A0A1J8QFE2	Aamy domain-containing protein.	Uncharacterized protein.	0.521
AZE42_03391	AZE42_02659	A0A1J8PVB4	A0A1J8QYT8	Aamy domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.686
AZE42_03391	AZE42_05470	A0A1J8PVB4	A0A1J8QIR3	Aamy domain-containing protein.	Aamy domain-containing protein.	0.823
AZE42_03391	AZE42_08275	A0A1J8PVB4	A0A1J8QFE2	Aamy domain-containing protein.	Uncharacterized protein.	0.521
AZE42_03391	AZE42_10631	A0A1J8PVB4	A0A1J8Q9F7	Aamy domain-containing protein.	Aamy domain-containing protein.	0.807
AZE42_05470	AZE42_03391	A0A1J8QIR3	A0A1J8PVB4	Aamy domain-containing protein.	Aamy domain-containing protein.	0.823
AZE42_05470	AZE42_08275	A0A1J8QIR3	A0A1J8QFE2	Aamy domain-containing protein.	Uncharacterized protein.	0.521
AZE42_05470	AZE42_10631	A0A1J8QIR3	A0A1J8Q9F7	Aamy domain-containing protein.	Aamy domain-containing protein.	0.807
AZE42_07345	AZE42_08275	A0A1J8QLP0	A0A1J8QFE2	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.690
AZE42_07345	AZE42_09360	A0A1J8QLP0	A0A1J8QA47	Nudix hydrolase domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.449
AZE42_08275	AZE42_02659	A0A1J8QFE2	A0A1J8QYT8	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.521
AZE42_08275	AZE42_03152	A0A1J8QFE2	A0A1J8QAC6	Uncharacterized protein.	Aamy domain-containing protein.	0.521
AZE42_08275	AZE42_03391	A0A1J8QFE2	A0A1J8PVB4	Uncharacterized protein.	Aamy domain-containing protein.	0.521
AZE42_08275	AZE42_05470	A0A1J8QFE2	A0A1J8QIR3	Uncharacterized protein.	Aamy domain-containing protein.	0.521
AZE42_08275	AZE42_07345	A0A1J8QFE2	A0A1J8QLP0	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.690
AZE42_08275	AZE42_08368	A0A1J8QFE2	A0A1J8PT23	Uncharacterized protein.	Uncharacterized protein.	0.521
AZE42_08275	AZE42_08369	A0A1J8QFE2	A0A1J8QND1	Uncharacterized protein.	Glyco_transf_5 domain-containing protein.	0.521