STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZE42_08643tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (394 aa)    
Predicted Functional Partners:
AZE42_04618
PAS domain-containing protein.
    
 0.958
AZE42_04355
Uncharacterized protein.
    
 0.861
AZE42_00395
Uncharacterized protein.
   
 0.818
AZE42_00516
Uncharacterized protein.
    
 0.815
AZE42_10904
CS domain-containing protein.
   
 0.808
AZE42_01311
Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.
    
 0.762
AZE42_03761
Fork-head domain-containing protein.
    
 0.758
AZE42_08431
Uncharacterized protein.
    
 0.745
AZE42_02077
Uncharacterized protein.
    
 0.745
AZE42_08938
Uncharacterized protein.
    
 0.745
Your Current Organism:
Rhizopogon vesiculosus
NCBI taxonomy Id: 180088
Other names: R. vesiculosus
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