AZE42_06432 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_06432

ZT_dimer domain-containing protein. (415 aa)

Predicted Functional Partners:

AZE42_05064

0.615

AZE42_11597

0.615

AZE42_01572

0.505

AZE42_01489

0.494

AZE42_05037

0.456

AZE42_05028

0.420

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_01489	AZE42_01572	A0A1J8Q7Y5	A0A1J8QRH5	Uncharacterized protein.	Uncharacterized protein.	0.940
AZE42_01489	AZE42_06432	A0A1J8Q7Y5	A0A1J8QLI6	Uncharacterized protein.	ZT_dimer domain-containing protein.	0.494
AZE42_01572	AZE42_01489	A0A1J8QRH5	A0A1J8Q7Y5	Uncharacterized protein.	Uncharacterized protein.	0.940
AZE42_01572	AZE42_06432	A0A1J8QRH5	A0A1J8QLI6	Uncharacterized protein.	ZT_dimer domain-containing protein.	0.505
AZE42_05028	AZE42_05037	A0A1J8QL08	A0A1J8QXA2	Uncharacterized protein.	MaoC-like domain-containing protein.	0.924
AZE42_05028	AZE42_06432	A0A1J8QL08	A0A1J8QLI6	Uncharacterized protein.	ZT_dimer domain-containing protein.	0.420
AZE42_05037	AZE42_05028	A0A1J8QXA2	A0A1J8QL08	MaoC-like domain-containing protein.	Uncharacterized protein.	0.924
AZE42_05037	AZE42_06432	A0A1J8QXA2	A0A1J8QLI6	MaoC-like domain-containing protein.	ZT_dimer domain-containing protein.	0.456
AZE42_05064	AZE42_06432	A0A1J8PLY2	A0A1J8QLI6	Uncharacterized protein.	ZT_dimer domain-containing protein.	0.615
AZE42_05064	AZE42_11597	A0A1J8PLY2	A0A1J8R8U6	Uncharacterized protein.	Malate dehydrogenase.	0.920
AZE42_06432	AZE42_01489	A0A1J8QLI6	A0A1J8Q7Y5	ZT_dimer domain-containing protein.	Uncharacterized protein.	0.494
AZE42_06432	AZE42_01572	A0A1J8QLI6	A0A1J8QRH5	ZT_dimer domain-containing protein.	Uncharacterized protein.	0.505
AZE42_06432	AZE42_05028	A0A1J8QLI6	A0A1J8QL08	ZT_dimer domain-containing protein.	Uncharacterized protein.	0.420
AZE42_06432	AZE42_05037	A0A1J8QLI6	A0A1J8QXA2	ZT_dimer domain-containing protein.	MaoC-like domain-containing protein.	0.456
AZE42_06432	AZE42_05064	A0A1J8QLI6	A0A1J8PLY2	ZT_dimer domain-containing protein.	Uncharacterized protein.	0.615
AZE42_06432	AZE42_11597	A0A1J8QLI6	A0A1J8R8U6	ZT_dimer domain-containing protein.	Malate dehydrogenase.	0.615
AZE42_11597	AZE42_05064	A0A1J8R8U6	A0A1J8PLY2	Malate dehydrogenase.	Uncharacterized protein.	0.920
AZE42_11597	AZE42_06432	A0A1J8R8U6	A0A1J8QLI6	Malate dehydrogenase.	ZT_dimer domain-containing protein.	0.615