STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AZE42_06654Uncharacterized protein. (309 aa)    
Predicted Functional Partners:
AZE42_09702
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 
 0.656
AZE42_04995
Trehalase.
   
 
 0.576
AZE42_07057
Trehalase.
   
 
 0.576
AZE42_00308
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
   0.475
AZE42_05793
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
  
 0.436
AZE42_05899
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
  
 0.424
AZE42_06762
Uncharacterized protein.
      
 0.422
AZE42_10428
Uncharacterized protein; Belongs to the synaptobrevin family.
 
      0.419
AZE42_11598
Uncharacterized protein.
   
  
 0.414
Your Current Organism:
Rhizopogon vesiculosus
NCBI taxonomy Id: 180088
Other names: R. vesiculosus
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