AZE42_01267 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_01267

Uncharacterized protein. (2046 aa)

Predicted Functional Partners:

AZE42_00906

0.999

AZE42_00565

0.999

AZE42_02542

0.999

AZE42_03418

0.998

AZE42_01286

0.998

AZE42_01736

0.998

AZE42_00737

0.998

WD40-1

0.998

AZE42_03289

0.998

AZE42_01078

0.997

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_00565	AZE42_00737	A0A1J8R5H7	A0A1J8QXY4	Brix domain-containing protein.	S4 RNA-binding domain-containing protein.	0.999
AZE42_00565	AZE42_00906	A0A1J8R5H7	A0A1J8QJ08	Brix domain-containing protein.	Utp12 domain-containing protein.	0.996
AZE42_00565	AZE42_01078	A0A1J8R5H7	A0A1J8PHD0	Brix domain-containing protein.	Uncharacterized protein.	0.987
AZE42_00565	AZE42_01267	A0A1J8R5H7	A0A1J8QZ85	Brix domain-containing protein.	Uncharacterized protein.	0.999
AZE42_00565	AZE42_01286	A0A1J8R5H7	A0A1J8PIL5	Brix domain-containing protein.	Sas10 domain-containing protein.	0.992
AZE42_00565	AZE42_01736	A0A1J8R5H7	A0A1J8Q597	Brix domain-containing protein.	Uncharacterized protein.	0.990
AZE42_00565	AZE42_02542	A0A1J8R5H7	A0A1J8R6L8	Brix domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
AZE42_00565	AZE42_03289	A0A1J8R5H7	A0A1J8RC76	Brix domain-containing protein.	Bms1-type G domain-containing protein.	0.996
AZE42_00565	AZE42_03418	A0A1J8R5H7	A0A1J8PEZ9	Brix domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.998
AZE42_00565	WD40-1	A0A1J8R5H7	A0A1J8R195	Brix domain-containing protein.	WD40-1 protein.	0.995
AZE42_00737	AZE42_00565	A0A1J8QXY4	A0A1J8R5H7	S4 RNA-binding domain-containing protein.	Brix domain-containing protein.	0.999
AZE42_00737	AZE42_00906	A0A1J8QXY4	A0A1J8QJ08	S4 RNA-binding domain-containing protein.	Utp12 domain-containing protein.	0.996
AZE42_00737	AZE42_01078	A0A1J8QXY4	A0A1J8PHD0	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.988
AZE42_00737	AZE42_01267	A0A1J8QXY4	A0A1J8QZ85	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.998
AZE42_00737	AZE42_01286	A0A1J8QXY4	A0A1J8PIL5	S4 RNA-binding domain-containing protein.	Sas10 domain-containing protein.	0.998
AZE42_00737	AZE42_01736	A0A1J8QXY4	A0A1J8Q597	S4 RNA-binding domain-containing protein.	Uncharacterized protein.	0.988
AZE42_00737	AZE42_02542	A0A1J8QXY4	A0A1J8R6L8	S4 RNA-binding domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.989
AZE42_00737	AZE42_03289	A0A1J8QXY4	A0A1J8RC76	S4 RNA-binding domain-containing protein.	Bms1-type G domain-containing protein.	0.995
AZE42_00737	AZE42_03418	A0A1J8QXY4	A0A1J8PEZ9	S4 RNA-binding domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.994
AZE42_00737	WD40-1	A0A1J8QXY4	A0A1J8R195	S4 RNA-binding domain-containing protein.	WD40-1 protein.	0.995