AZE42_03498 protein (Rhizopogon vesiculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AZE42_03498

Uncharacterized protein. (539 aa)

Predicted Functional Partners:

AZE42_05063

0.902

AZE42_01485

0.833

AZE42_01963

0.833

AZE42_08124

0.833

AZE42_06336

0.831

AZE42_02395

0.821

AZE42_00431

0.811

AZE42_13816

0.795

AZE42_05956

0.770

AZE42_00345

0.770

Your Current Organism:

Rhizopogon vesiculosus

NCBI taxonomy Id: 180088
Other names: R. vesiculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AZE42_00345	AZE42_01485	A0A1J8QGD3	A0A1J8PLI8	Uncharacterized protein.	Uncharacterized protein.	0.868
AZE42_00345	AZE42_01963	A0A1J8QGD3	A0A1J8PSY0	Uncharacterized protein.	Uncharacterized protein.	0.868
AZE42_00345	AZE42_03498	A0A1J8QGD3	A0A1J8R563	Uncharacterized protein.	Uncharacterized protein.	0.770
AZE42_00345	AZE42_08124	A0A1J8QGD3	A0A1J8R6J4	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.868
AZE42_00345	AZE42_13816	A0A1J8QGD3	A0A1J8RBE0	Uncharacterized protein.	Uncharacterized protein.	0.868
AZE42_00431	AZE42_03498	A0A1J8R0P3	A0A1J8R563	Uncharacterized protein.	Uncharacterized protein.	0.811
AZE42_00431	AZE42_05063	A0A1J8R0P3	A0A1J8QAM5	Uncharacterized protein.	Uncharacterized protein.	0.476
AZE42_01485	AZE42_00345	A0A1J8PLI8	A0A1J8QGD3	Uncharacterized protein.	Uncharacterized protein.	0.868
AZE42_01485	AZE42_01963	A0A1J8PLI8	A0A1J8PSY0	Uncharacterized protein.	Uncharacterized protein.	0.900
AZE42_01485	AZE42_02395	A0A1J8PLI8	A0A1J8Q1W8	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.470
AZE42_01485	AZE42_03498	A0A1J8PLI8	A0A1J8R563	Uncharacterized protein.	Uncharacterized protein.	0.833
AZE42_01485	AZE42_05956	A0A1J8PLI8	A0A1J8PY72	Uncharacterized protein.	Uncharacterized protein.	0.868
AZE42_01485	AZE42_06336	A0A1J8PLI8	A0A1J8PQ39	Uncharacterized protein.	Uncharacterized protein.	0.596
AZE42_01485	AZE42_08124	A0A1J8PLI8	A0A1J8R6J4	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.869
AZE42_01485	AZE42_13816	A0A1J8PLI8	A0A1J8RBE0	Uncharacterized protein.	Uncharacterized protein.	0.933
AZE42_01963	AZE42_00345	A0A1J8PSY0	A0A1J8QGD3	Uncharacterized protein.	Uncharacterized protein.	0.868
AZE42_01963	AZE42_01485	A0A1J8PSY0	A0A1J8PLI8	Uncharacterized protein.	Uncharacterized protein.	0.900
AZE42_01963	AZE42_02395	A0A1J8PSY0	A0A1J8Q1W8	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.470
AZE42_01963	AZE42_03498	A0A1J8PSY0	A0A1J8R563	Uncharacterized protein.	Uncharacterized protein.	0.833
AZE42_01963	AZE42_05956	A0A1J8PSY0	A0A1J8PY72	Uncharacterized protein.	Uncharacterized protein.	0.868