STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speB-2Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (323 aa)    
Predicted Functional Partners:
OJZ66990.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.874
OJZ65174.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
OJZ65170.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
OJZ67082.1
Carbon-nitrogen hydrolase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.766
OJZ65929.1
Ornithine--oxo-acid transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.757
OJZ66991.1
Agmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family.
    
 0.755
OJZ65172.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
OJZ65173.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
uca
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.742
OJZ68636.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.726
Your Current Organism:
Mycolicibacterium diernhoferi
NCBI taxonomy Id: 1801
Other names: ATCC 19340, CIP 105384, DSM 43524, HAMBI 2269, IFO 14756, JCM 6371, M. diernhoferi, Mycobacterium diernhoferi, NBRC 14756, strain 41001
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