STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC14841.1Soluble lytic murein transglycosylase. (658 aa)    
Predicted Functional Partners:
SFC14810.1
Glutathione S-transferase.
       0.769
SFC97443.1
Flagellar motor switch protein FliN/FliY.
 
    0.765
cca
tRNA nucleotidyltransferase (CCA-adding enzyme); Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
  
    0.745
SFC14737.1
Acetyltransferase (GNAT) family protein.
 
     0.728
SFD33254.1
4-amino-4-deoxy-L-arabinose transferase.
  
    0.679
SFC39284.1
Soluble lytic murein transglycosylase.
  
   
 0.637
SFC14875.1
5-formyltetrahydrofolate cyclo-ligase family protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.625
SFC83022.1
Membrane-bound lytic murein transglycosylase D.
 
  
 0.602
SFC90995.1
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
    0.599
priB
Restart primosome assembly protein PriB; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.588
Your Current Organism:
Collimonas sp. OK412
NCBI taxonomy Id: 1801619
Other names: C. sp. OK412
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