Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ33551.1 | SJZ34480.1 | SAMN02745174_00065 | SAMN02745174_00134 | Hypothetical protein. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.778 |
SJZ33551.1 | SJZ34531.1 | SAMN02745174_00065 | SAMN02745174_00137 | Hypothetical protein. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.819 |
SJZ33551.1 | SJZ44729.1 | SAMN02745174_00065 | SAMN02745174_00543 | Hypothetical protein. | Hypothetical protein. | 0.786 |
SJZ33551.1 | SJZ90685.1 | SAMN02745174_00065 | SAMN02745174_01913 | Hypothetical protein. | Superfamily II DNA and RNA helicase. | 0.819 |
SJZ33551.1 | map | SAMN02745174_00065 | SAMN02745174_02167 | Hypothetical protein. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.844 |
SJZ33551.1 | rplD | SAMN02745174_00065 | SAMN02745174_02146 | Hypothetical protein. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
SJZ33551.1 | rplJ | SAMN02745174_00065 | SAMN02745174_02248 | Hypothetical protein. | Large subunit ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.998 |
SJZ33551.1 | rplX | SAMN02745174_00065 | SAMN02745174_02156 | Hypothetical protein. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.997 |
SJZ33551.1 | rpmD | SAMN02745174_00065 | SAMN02745174_02163 | Hypothetical protein. | LSU ribosomal protein L30P. | 0.996 |
SJZ34480.1 | SJZ33551.1 | SAMN02745174_00134 | SAMN02745174_00065 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.778 |
SJZ34480.1 | SJZ34531.1 | SAMN02745174_00134 | SAMN02745174_00137 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.842 |
SJZ34480.1 | SJZ44729.1 | SAMN02745174_00134 | SAMN02745174_00543 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Hypothetical protein. | 0.806 |
SJZ34480.1 | SJZ90685.1 | SAMN02745174_00134 | SAMN02745174_01913 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Superfamily II DNA and RNA helicase. | 0.749 |
SJZ34480.1 | rplD | SAMN02745174_00134 | SAMN02745174_02146 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.737 |
SJZ34480.1 | rplJ | SAMN02745174_00134 | SAMN02745174_02248 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Large subunit ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.796 |
SJZ34480.1 | rplX | SAMN02745174_00134 | SAMN02745174_02156 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Large subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.757 |
SJZ34480.1 | rpmD | SAMN02745174_00134 | SAMN02745174_02163 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | LSU ribosomal protein L30P. | 0.772 |
SJZ34531.1 | SJZ33551.1 | SAMN02745174_00137 | SAMN02745174_00065 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.819 |
SJZ34531.1 | SJZ34480.1 | SAMN02745174_00137 | SAMN02745174_00134 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.842 |
SJZ34531.1 | SJZ44729.1 | SAMN02745174_00137 | SAMN02745174_00543 | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.797 |
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